📃 Publications

All the publications can be found on google scholar

PerturBase: a comprehensive database for single-cell perturbation data analysis and visualization

Zhiting Wei#, Duanmiao Si#, Bin Duan#, Yicheng Gao#, Qian Yu, Zhenbo Zhang, Ling Guo, Qi Liu

Multi-slice spatial transcriptome domain analysis with SpaDo

Bin Duan#, Shaoqi Chen#, Xiaojie Cheng#, Qi Liu

Personalized tumor combination therapy optimization using the single-cell transcriptome

Chen Tang#, Shaliu Fu#, Xuan Jin, Wannian Li, Feiyang Xing, Bin Duan, Ping Wang, Qi Liu

Privacy-preserving integration of multiple institutional data for single-cell type identification with scPrivacy

Shaoqi Chen#, Bin Duan#, Chenyu Zhu, Chen Tang, Qiang Yang, Qi Liu

DrSim: Similarity Learning for Transcriptional Phenotypic Drug Discovery

Zhiting Wei#, Sheng Zhu#, Xiaohan Chen, Chenyu Zhu, Bin Duan, Qi Liu

A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data

Gaoyang Li#, Shaliu Fu#, Shuguang Wang, Chenyu Zhu, Bin Duan, Ping Wang, Qi Liu

Integrating multiple references for single-cell assignment

Bin Duan#, Shaoqi Chen#, Xiaohan Chen#, Chenyu Zhu, Chen Tang, Qi Liu

Learning for single-cell assignment

Bin Duan#, Chenyu Zhu, Guohui Chuai, Chen Tang, Xiaohan Chen, Qi Liu

Model-based understanding of single-cell CRISPR screening

Bin Duan#, Chi Zhou, Chengyu Zhu, Yifei Yu, Shuyang Sun, Qi Liu

DeepCRISPR: optimized CRISPR guide RNA design by deep learning

Guohui Chuai#, Hanhui Ma#, Jifang Yan, Ming Chen, Nanfang Hong, Dongyu Xue, Chi Zhou, Chenyu Zhu, Ke Chen, Bin Duan, Jia Wei, Qi Liu