Publications

Zhiting Wei#, Duanmiao Si#, Bin Duan#, Yicheng Gao#, Qian Yu, Zhenbo Zhang, Ling Guo, Qi Liu (2024). PerturBase: a comprehensive database for single-cell perturbation data analysis and visualization. Nucleic Acids Research. (IF: 16.97).

DOI

Fengying Sun#, Haoyan Li#, Dongqing Sun#, Shaliu Fu#, Lei Gu#, Xin Shao#, Qinqin Wang#, Xin Dong#, Bin Duan#, Feiyang Xing#, Jun Wu#, Minmin Xiao, Fangqing Zhao, Jing-Dong J. Han, Qi Liu, Xiaohui Fan, Chen Li, Chenfei Wang, Tieliu Shi (2024). Single-cell omics: experimental workflow, data analyses and applications. Science China Life Science. (IF: 10.38，封面文章).

DOI

Bin Duan#, Shaoqi Chen#, Xiaojie Cheng#, Qi Liu (2024). Multi-slice spatial transcriptome domain analysis with SpaDo. Genome Biology 25(1): 73. (IF: 12.3).

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Chen Tang#, Shaliu Fu#, Xuan Jin, Wannian Li, Feiyang Xing, Bin Duan, Ping Wang, Qi Liu (2023). Personalized tumor combination therapy optimization using the single-cell transcriptome. Genome Medicine 15(1): 105 (IF: 12.3).

DOI

Shaoqi Chen#, Bin Duan#, Chenyu Zhu, Chen Tang, Qiang Yang, Qi Liu (2022). Privacy-preserving integration of multiple institutional data for single-cell type identification with scPrivacy. Science China Life Science: 1-13. (IF: 10.38).

DOI

Zhiting Wei#, Sheng Zhu#, Xiaohan Chen, Chenyu Zhu, Bin Duan, Qi Liu (2022). DrSim: Similarity Learning for Transcriptional Phenotypic Drug Discovery. Genomics Proteomics Bioinformatics 20(5): 1028-1036 (IF: 9.5).

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Gaoyang Li#, Shaliu Fu#, Shuguang Wang, Chenyu Zhu, Bin Duan, Ping Wang, Qi Liu (2022). A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data. Genome Biology 23(1): 20 (IF: 12.3).

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Bin Duan#, Shaoqi Chen#, Xiaohan Chen#, Chenyu Zhu, Chen Tang, Qi Liu (2021). Integrating multiple references for single-cell assignment. Nucleic Acids Research 49(14): e80. (IF：16.97).

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Bin Duan#, Chenyu Zhu, Guohui Chuai, Chen Tang, Xiaohan Chen, Qi Liu (2020). Learning for single-cell assignment. Science Advances 6(44). (IF: 14.14, 入选中国生物信息学十大进展).

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Bin Duan#, Chi Zhou, Chengyu Zhu, Yifei Yu, Shuyang Sun, Qi Liu (2019). Model-based understanding of single-cell CRISPR screening. Nature Communications 10(1): 2233. (IF: 12.12, 入选2019年度中国生物信息学十大算法).

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Guohui Chuai#, Hanhui Ma#, Jifang Yan, Ming Chen, Nanfang Hong, Dongyu Xue, Chi Zhou, Chenyu Zhu, Ke Chen, Bin Duan, Jia Wei, Qi Liu (2018). DeepCRISPR: optimized CRISPR guide RNA design by deep learning. Genome Biology 19(1): 80 (IF: 12.3).

DOI